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Bioinformatics Software

The Scriptome - cgr.harvard.edu "Protocols for Manipulating Biological Data": a set of tools that filter, format, and merge data in tabular or common biological formats; organized as a classified collection of Perl one-liners   GeneRunner for Windows - generunner.com A fairly old sequence analysis tool for everyday lab use. Formerly a commercial product - now "abandonware.   The ARB Project - arb-home.de A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C   Sequence Analysis for Mac OS X - informagen.com A freeware Mac OS X application written in Java that does many standard types of DNA and protein sequence analysis tasks   limmaGUI - bioinf.wehi.edu.au A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes

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